[MURG] [Ecell-devel] Version 3.1.99 (fwd from shafi@sfc.keio.ac.jp)

[Eugen Leitl]

----- Forwarded message from Kouichi Takahashi <shafi at sfc.keio.ac.jp> -----

From: Kouichi Takahashi <shafi at sfc.keio.ac.jp>
Date: 16 Oct 2003 18:13:07 +0900
To: ecell-devel at lists.sourceforge.net, e-cell-users at e-cell.org
Cc: shafi at sfc.keio.ac.jp
Subject: [Ecell-devel] Version 3.1.99
X-Mailer: Ximian Evolution 1.4.3 (1.4.3-2) 

Hi everyone,


We are pleased to announce the availability of E-Cell Simulation
Environment Version 3.1.99 (Hekkever).

Source code and binary packages for Linux/Windows are available at:
http://sourceforge.net/project/showfiles.php?group_id=72485&release_id=190942


Some prominent new features of this version, among others, are:

- New ExpressionFluxProcess class, which enables users to 
  use infix rate equations in model files, without creating
  a new class for each reaction mechanism.  (written by Ishida)
  The functionality is compatible with SBML level 2.
  Usage in the manual will follow.

- Parameter estimation toolkit using Generic Algorithm, that
  works on SessionManager distributed computation platform.
  (by Sugimoto)

- This is the first version of E-Cell 3 that can be built and
  installed on Windows 2000/XP. (by Satya)
 
  The binary installer package is available at the download page.

  Windows support is in beta.   The installer is about 60MB,
  and installation requires about 300MB HDD space.

  For those who want to build it from scratch, a detailed instruction on
  building ecell3 on Windows, written by Satya Arjunan, can be seen
  here:
  http://www2.e-cell.org/moin/moin.cgi/CreatingWindowsInstaller


-sha



Here goes the full list of changes from version 3.1.98.


* added ExpressionFluxProcess (tishida)
* added ConstantFluxProcess (tkitayama)
* Drosophila sample model is modified by using ExpressionFluxProcess
   instead of PythonFluxProcess (tishida)
* added DMInfo functionality to the core (shafi)
* changed logger mechanism (bgabor)
* added plotting history traces by min-max plotting (bgabor)
* fixed a serious undefined reference to my_open_to_read bug in Vvector (bgabor)
* StepperWindow property update strategy optimized. Properties consisting
   of tuples are not refreshed. (bgabor)
* When TracerWindow is created, loggers are created automatically and show
   history mode is default. (bgabor)
* Step button now doesn't overwrite the step size text input. (bgabor)
* Unit measure doesn't disappear when changing to strip mode. (bgabor)
* If user creates loggers while simulation is running, they get a warning
   poup message. (bgabor)
* Changes for MinGW compilation on MS-Windows environment (satyanandavel)
* enabled direct package installation in Windows (satyanandavel)
* added a parameter estimation toolkit using Genetic Algorithm and
   SessionManager (osugi)
* updated for deletion of some Loki files, comment update (shafi)
* MessageWindow now inserts new text at the end of text instead at
   cursor. (bgabor)
* Closing windows really close them not just iconify. buttons and
   menuitems for these windows are now togglebuttons and menus. (bgabor)
* gtk-preference menupoint taken out because it is not implemented (bgabor)
* Session loadscript now changes working directory to script's dir. (bgabor)
* ToggleWindow method added to GtkSessionMonitor (bgabor)
* Bug fix. Now destroying board window makes add to board button
   insensitive on entitylistwindows. (bgabor)
* fixed the mysterious time counter bug in osogo. (bgabor)
* fixed bugs of eri2eml (tsakurada)
* OSOGOPATH needs to be declared beforehand for gecell3-session
   since config.py no longer defines it (satyanandavel)
* updated users manual (shafi)




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-- Eugen* Leitl <a href="http://leitl.org">leitl</a>
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